in house proteomics analysis pipeline Search Results


pipeline ip2  (Integrated Proteomics Applications)
86
Integrated Proteomics Applications pipeline ip2
Pipeline Ip2, supplied by Integrated Proteomics Applications, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/pipeline ip2/product/Integrated Proteomics Applications
Average 86 stars, based on 1 article reviews
pipeline ip2 - by Bioz Stars, 2026-05
86/100 stars
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trans-proteomic pipeline 4.6.0  (SourceForge net)
90
SourceForge net trans-proteomic pipeline 4.6.0

Trans Proteomic Pipeline 4.6.0, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/trans-proteomic pipeline 4.6.0/product/SourceForge net
Average 90 stars, based on 1 article reviews
trans-proteomic pipeline 4.6.0 - by Bioz Stars, 2026-05
90/100 stars
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massmatrix proteomic pipeline  (MassMatrix Inc)
90
MassMatrix Inc massmatrix proteomic pipeline

Massmatrix Proteomic Pipeline, supplied by MassMatrix Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/massmatrix proteomic pipeline/product/MassMatrix Inc
Average 90 stars, based on 1 article reviews
massmatrix proteomic pipeline - by Bioz Stars, 2026-05
90/100 stars
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trans-proteomic pipeline  (SourceForge net)
90
SourceForge net trans-proteomic pipeline

Trans Proteomic Pipeline, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/trans-proteomic pipeline/product/SourceForge net
Average 90 stars, based on 1 article reviews
trans-proteomic pipeline - by Bioz Stars, 2026-05
90/100 stars
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trans proteomic pipeline  (Dualsystems Biotech)
90
Dualsystems Biotech trans proteomic pipeline

Trans Proteomic Pipeline, supplied by Dualsystems Biotech, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/trans proteomic pipeline/product/Dualsystems Biotech
Average 90 stars, based on 1 article reviews
trans proteomic pipeline - by Bioz Stars, 2026-05
90/100 stars
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central proteomics facilities pipeline  (SourceForge net)
90
SourceForge net central proteomics facilities pipeline
<t>Proteomics</t> elucidates function and mechanism in molecular endocrinology. The schematic shows events on which proteomics reports in general functional models of G protein-coupled receptor and NR signaling. The binding of a variety of peptide ligands to G protein-coupled receptors (GPCR) induces recruitment of intracellular interacting partner proteins, touching off a variety of kinase cascades with functional endpoints in the cytoplasm (phosphorylated target protein) and nucleus. Nuclear targets of kinase cascades include transcription factors (TF), NR, and coregulators (CoR), which collectively modulate target gene expression and de novo protein synthesis. NR ligands bind directly to NR (the classic genomic model), inducing the recruitment of coregulators and modulating expression of target genes. Certain NR ligands have also been reported to elicit rapid cellular effects via cross talk with cellular kinase cascades (the nongenomic model). Phosphorylation events upon which phosphoproteomics reports are indicated.
Central Proteomics Facilities Pipeline, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/central proteomics facilities pipeline/product/SourceForge net
Average 90 stars, based on 1 article reviews
central proteomics facilities pipeline - by Bioz Stars, 2026-05
90/100 stars
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proteomic pipelines  (MassMatrix Inc)
90
MassMatrix Inc proteomic pipelines
<t>Proteomics</t> elucidates function and mechanism in molecular endocrinology. The schematic shows events on which proteomics reports in general functional models of G protein-coupled receptor and NR signaling. The binding of a variety of peptide ligands to G protein-coupled receptors (GPCR) induces recruitment of intracellular interacting partner proteins, touching off a variety of kinase cascades with functional endpoints in the cytoplasm (phosphorylated target protein) and nucleus. Nuclear targets of kinase cascades include transcription factors (TF), NR, and coregulators (CoR), which collectively modulate target gene expression and de novo protein synthesis. NR ligands bind directly to NR (the classic genomic model), inducing the recruitment of coregulators and modulating expression of target genes. Certain NR ligands have also been reported to elicit rapid cellular effects via cross talk with cellular kinase cascades (the nongenomic model). Phosphorylation events upon which phosphoproteomics reports are indicated.
Proteomic Pipelines, supplied by MassMatrix Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/proteomic pipelines/product/MassMatrix Inc
Average 90 stars, based on 1 article reviews
proteomic pipelines - by Bioz Stars, 2026-05
90/100 stars
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openms proteomics pipeline (topp)  (SourceForge net)
90
SourceForge net openms proteomics pipeline (topp)
<t>Proteomics</t> elucidates function and mechanism in molecular endocrinology. The schematic shows events on which proteomics reports in general functional models of G protein-coupled receptor and NR signaling. The binding of a variety of peptide ligands to G protein-coupled receptors (GPCR) induces recruitment of intracellular interacting partner proteins, touching off a variety of kinase cascades with functional endpoints in the cytoplasm (phosphorylated target protein) and nucleus. Nuclear targets of kinase cascades include transcription factors (TF), NR, and coregulators (CoR), which collectively modulate target gene expression and de novo protein synthesis. NR ligands bind directly to NR (the classic genomic model), inducing the recruitment of coregulators and modulating expression of target genes. Certain NR ligands have also been reported to elicit rapid cellular effects via cross talk with cellular kinase cascades (the nongenomic model). Phosphorylation events upon which phosphoproteomics reports are indicated.
Openms Proteomics Pipeline (Topp), supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/openms proteomics pipeline (topp)/product/SourceForge net
Average 90 stars, based on 1 article reviews
openms proteomics pipeline (topp) - by Bioz Stars, 2026-05
90/100 stars
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scaffold 3 trans proteomic pipeline tpp  (Proteome Software Inc)
86
Proteome Software Inc scaffold 3 trans proteomic pipeline tpp
<t>Proteomics</t> elucidates function and mechanism in molecular endocrinology. The schematic shows events on which proteomics reports in general functional models of G protein-coupled receptor and NR signaling. The binding of a variety of peptide ligands to G protein-coupled receptors (GPCR) induces recruitment of intracellular interacting partner proteins, touching off a variety of kinase cascades with functional endpoints in the cytoplasm (phosphorylated target protein) and nucleus. Nuclear targets of kinase cascades include transcription factors (TF), NR, and coregulators (CoR), which collectively modulate target gene expression and de novo protein synthesis. NR ligands bind directly to NR (the classic genomic model), inducing the recruitment of coregulators and modulating expression of target genes. Certain NR ligands have also been reported to elicit rapid cellular effects via cross talk with cellular kinase cascades (the nongenomic model). Phosphorylation events upon which phosphoproteomics reports are indicated.
Scaffold 3 Trans Proteomic Pipeline Tpp, supplied by Proteome Software Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/scaffold 3 trans proteomic pipeline tpp/product/Proteome Software Inc
Average 86 stars, based on 1 article reviews
scaffold 3 trans proteomic pipeline tpp - by Bioz Stars, 2026-05
86/100 stars
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non redundant reference proteomes  (Unigene)
86
Unigene non redundant reference proteomes
<t>Proteomics</t> elucidates function and mechanism in molecular endocrinology. The schematic shows events on which proteomics reports in general functional models of G protein-coupled receptor and NR signaling. The binding of a variety of peptide ligands to G protein-coupled receptors (GPCR) induces recruitment of intracellular interacting partner proteins, touching off a variety of kinase cascades with functional endpoints in the cytoplasm (phosphorylated target protein) and nucleus. Nuclear targets of kinase cascades include transcription factors (TF), NR, and coregulators (CoR), which collectively modulate target gene expression and de novo protein synthesis. NR ligands bind directly to NR (the classic genomic model), inducing the recruitment of coregulators and modulating expression of target genes. Certain NR ligands have also been reported to elicit rapid cellular effects via cross talk with cellular kinase cascades (the nongenomic model). Phosphorylation events upon which phosphoproteomics reports are indicated.
Non Redundant Reference Proteomes, supplied by Unigene, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/non redundant reference proteomes/product/Unigene
Average 86 stars, based on 1 article reviews
non redundant reference proteomes - by Bioz Stars, 2026-05
86/100 stars
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trans-proteomic pipeline  (LabKey Corporation)
90
LabKey Corporation trans-proteomic pipeline
<t>Proteomics</t> elucidates function and mechanism in molecular endocrinology. The schematic shows events on which proteomics reports in general functional models of G protein-coupled receptor and NR signaling. The binding of a variety of peptide ligands to G protein-coupled receptors (GPCR) induces recruitment of intracellular interacting partner proteins, touching off a variety of kinase cascades with functional endpoints in the cytoplasm (phosphorylated target protein) and nucleus. Nuclear targets of kinase cascades include transcription factors (TF), NR, and coregulators (CoR), which collectively modulate target gene expression and de novo protein synthesis. NR ligands bind directly to NR (the classic genomic model), inducing the recruitment of coregulators and modulating expression of target genes. Certain NR ligands have also been reported to elicit rapid cellular effects via cross talk with cellular kinase cascades (the nongenomic model). Phosphorylation events upon which phosphoproteomics reports are indicated.
Trans Proteomic Pipeline, supplied by LabKey Corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/trans-proteomic pipeline/product/LabKey Corporation
Average 90 stars, based on 1 article reviews
trans-proteomic pipeline - by Bioz Stars, 2026-05
90/100 stars
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trans-proteomic pipeline  (BioWorks Inc)
90
BioWorks Inc trans-proteomic pipeline
Summary of recent proteomic analyses of gastric cancer
Trans Proteomic Pipeline, supplied by BioWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/trans-proteomic pipeline/product/BioWorks Inc
Average 90 stars, based on 1 article reviews
trans-proteomic pipeline - by Bioz Stars, 2026-05
90/100 stars
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Image Search Results


Journal: Cell Reports

Article Title: Breast Cancer Classification Based on Proteotypes Obtained by SWATH Mass Spectrometry

doi: 10.1016/j.celrep.2019.06.046

Figure Lengend Snippet:

Article Snippet: Trans-Proteomic Pipeline (TPP) 4.6.0 , ( ) , https://sourceforge.net/projects/sashimi/files/.

Techniques: Plasmid Preparation, Recombinant, Data-independent acquisition, Mass Spectrometry, Microarray, Sequencing, Software, Hydrophilic Interaction Liquid Chromatography

Proteomics elucidates function and mechanism in molecular endocrinology. The schematic shows events on which proteomics reports in general functional models of G protein-coupled receptor and NR signaling. The binding of a variety of peptide ligands to G protein-coupled receptors (GPCR) induces recruitment of intracellular interacting partner proteins, touching off a variety of kinase cascades with functional endpoints in the cytoplasm (phosphorylated target protein) and nucleus. Nuclear targets of kinase cascades include transcription factors (TF), NR, and coregulators (CoR), which collectively modulate target gene expression and de novo protein synthesis. NR ligands bind directly to NR (the classic genomic model), inducing the recruitment of coregulators and modulating expression of target genes. Certain NR ligands have also been reported to elicit rapid cellular effects via cross talk with cellular kinase cascades (the nongenomic model). Phosphorylation events upon which phosphoproteomics reports are indicated.

Journal: Molecular Endocrinology

Article Title: Minireview: Progress and Challenges in Proteomics Data Management, Sharing, and Integration

doi: 10.1210/me.2012-1180

Figure Lengend Snippet: Proteomics elucidates function and mechanism in molecular endocrinology. The schematic shows events on which proteomics reports in general functional models of G protein-coupled receptor and NR signaling. The binding of a variety of peptide ligands to G protein-coupled receptors (GPCR) induces recruitment of intracellular interacting partner proteins, touching off a variety of kinase cascades with functional endpoints in the cytoplasm (phosphorylated target protein) and nucleus. Nuclear targets of kinase cascades include transcription factors (TF), NR, and coregulators (CoR), which collectively modulate target gene expression and de novo protein synthesis. NR ligands bind directly to NR (the classic genomic model), inducing the recruitment of coregulators and modulating expression of target genes. Certain NR ligands have also been reported to elicit rapid cellular effects via cross talk with cellular kinase cascades (the nongenomic model). Phosphorylation events upon which phosphoproteomics reports are indicated.

Article Snippet: Central Proteomics Facilities Pipeline (CPFP) , Suite for labeled or label-free quantitation in core proteomics facilities , http://cpfp.sourceforge.net ( 124 ).

Techniques: Functional Assay, Binding Assay, Targeted Gene Expression, Expressing, Phospho-proteomics

Selected MS data analysis pipeline suites

Journal: Molecular Endocrinology

Article Title: Minireview: Progress and Challenges in Proteomics Data Management, Sharing, and Integration

doi: 10.1210/me.2012-1180

Figure Lengend Snippet: Selected MS data analysis pipeline suites

Article Snippet: Central Proteomics Facilities Pipeline (CPFP) , Suite for labeled or label-free quantitation in core proteomics facilities , http://cpfp.sourceforge.net ( 124 ).

Techniques: Labeling, Quantitation Assay, Multiplex sample analysis, Phospho-proteomics, Biomarker Discovery

Summary of recent proteomic analyses of gastric cancer

Journal: World Journal of Gastroenterology

Article Title: Recent advances in mass spectrometry-based proteomics of gastric cancer

doi: 10.3748/wjg.v22.i37.8283

Figure Lengend Snippet: Summary of recent proteomic analyses of gastric cancer

Article Snippet: GC tissue , Global proteome , LTQ Orbitrap XL , Label-free, Bioworks Browser (v3.3.1), Trans-Proteomic Pipeline (v4.0) , Shen et al[ ], 2015 .

Techniques: Membrane, Multiplex sample analysis, Peptide Mass Fingerprinting, Targeted Proteomics, Glycoproteomics, Labeling